大脑网络将大脑区域之间的复杂连接性描述为图形结构,这为研究脑连接素提供了强大的手段。近年来,图形神经网络已成为使用结构化数据的普遍学习范式。但是,由于数据获取的成本相对较高,大多数大脑网络数据集的样本量受到限制,这阻碍了足够的培训中的深度学习模型。受元学习的启发,该论文以有限的培训示例快速学习新概念,研究了在跨数据库中分析脑连接组的数据有效培训策略。具体而言,我们建议在大型样本大小的数据集上进行元训练模型,并将知识转移到小数据集中。此外,我们还探索了两种面向脑网络的设计,包括Atlas转换和自适应任务重新启动。与其他训练前策略相比,我们的基于元学习的方法实现了更高和稳定的性能,这证明了我们提出的解决方案的有效性。该框架还能够以数据驱动的方式获得有关数据集和疾病之间相似之处的新见解。
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Mapping the connectome of the human brain using structural or functional connectivity has become one of the most pervasive paradigms for neuroimaging analysis. Recently, Graph Neural Networks (GNNs) motivated from geometric deep learning have attracted broad interest due to their established power for modeling complex networked data. Despite their superior performance in many fields, there has not yet been a systematic study of how to design effective GNNs for brain network analysis. To bridge this gap, we present BrainGB, a benchmark for brain network analysis with GNNs. BrainGB standardizes the process by (1) summarizing brain network construction pipelines for both functional and structural neuroimaging modalities and (2) modularizing the implementation of GNN designs. We conduct extensive experiments on datasets across cohorts and modalities and recommend a set of general recipes for effective GNN designs on brain networks. To support open and reproducible research on GNN-based brain network analysis, we host the BrainGB website at https://braingb.us with models, tutorials, examples, as well as an out-of-box Python package. We hope that this work will provide useful empirical evidence and offer insights for future research in this novel and promising direction.
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In this paper, we propose a novel technique, namely INVALIDATOR, to automatically assess the correctness of APR-generated patches via semantic and syntactic reasoning. INVALIDATOR reasons about program semantic via program invariants while it also captures program syntax via language semantic learned from large code corpus using the pre-trained language model. Given a buggy program and the developer-patched program, INVALIDATOR infers likely invariants on both programs. Then, INVALIDATOR determines that a APR-generated patch overfits if: (1) it violates correct specifications or (2) maintains errors behaviors of the original buggy program. In case our approach fails to determine an overfitting patch based on invariants, INVALIDATOR utilizes a trained model from labeled patches to assess patch correctness based on program syntax. The benefit of INVALIDATOR is three-fold. First, INVALIDATOR is able to leverage both semantic and syntactic reasoning to enhance its discriminant capability. Second, INVALIDATOR does not require new test cases to be generated but instead only relies on the current test suite and uses invariant inference to generalize the behaviors of a program. Third, INVALIDATOR is fully automated. We have conducted our experiments on a dataset of 885 patches generated on real-world programs in Defects4J. Experiment results show that INVALIDATOR correctly classified 79% overfitting patches, accounting for 23% more overfitting patches being detected by the best baseline. INVALIDATOR also substantially outperforms the best baselines by 14% and 19% in terms of Accuracy and F-Measure, respectively.
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In this paper, we study the problem of knowledge-intensive text-to-SQL, in which domain knowledge is necessary to parse expert questions into SQL queries over domain-specific tables. We formalize this scenario by building a new Chinese benchmark KnowSQL consisting of domain-specific questions covering various domains. We then address this problem by presenting formulaic knowledge, rather than by annotating additional data examples. More concretely, we construct a formulaic knowledge bank as a domain knowledge base and propose a framework (ReGrouP) to leverage this formulaic knowledge during parsing. Experiments using ReGrouP demonstrate a significant 28.2% improvement overall on KnowSQL.
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Fine-grained classification and counting of bone marrow erythroid cells are vital for evaluating the health status and formulating therapeutic schedules for leukemia or hematopathy. Due to the subtle visual differences between different types of erythroid cells, it is challenging to apply existing image-based deep learning models for fine-grained erythroid cell classification. Moreover, there is no large open-source datasets on erythroid cells to support the model training. In this paper, we introduce BMEC (Bone Morrow Erythroid Cells), the first large fine-grained image dataset of erythroid cells, to facilitate more deep learning research on erythroid cells. BMEC contains 5,666 images of individual erythroid cells, each of which is extracted from the bone marrow erythroid cell smears and professionally annotated to one of the four types of erythroid cells. To distinguish the erythroid cells, one key indicator is the cell shape which is closely related to the cell growth and maturation. Therefore, we design a novel shape-aware image classification network for fine-grained erythroid cell classification. The shape feature is extracted from the shape mask image and aggregated to the raw image feature with a shape attention module. With the shape-attended image feature, our network achieved superior classification performance (81.12\% top-1 accuracy) on the BMEC dataset comparing to the baseline methods. Ablation studies also demonstrate the effectiveness of incorporating the shape information for the fine-grained cell classification. To further verify the generalizability of our method, we tested our network on two additional public white blood cells (WBC) datasets and the results show our shape-aware method can generally outperform recent state-of-the-art works on classifying the WBC. The code and BMEC dataset can be found on https://github.com/wangye8899/BMEC.
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In recent years, graph representation learning has achieved remarkable success while suffering from low-quality data problems. As a mature technology to improve data quality in computer vision, data augmentation has also attracted increasing attention in graph domain. For promoting the development of this emerging research direction, in this survey, we comprehensively review and summarize the existing graph data augmentation (GDAug) techniques. Specifically, we first summarize a variety of feasible taxonomies, and then classify existing GDAug studies based on fine-grained graph elements. Furthermore, for each type of GDAug technique, we formalize the general definition, discuss the technical details, and give schematic illustration. In addition, we also summarize common performance metrics and specific design metrics for constructing a GDAug evaluation system. Finally, we summarize the applications of GDAug from both data and model levels, as well as future directions.
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Speech-centric machine learning systems have revolutionized many leading domains ranging from transportation and healthcare to education and defense, profoundly changing how people live, work, and interact with each other. However, recent studies have demonstrated that many speech-centric ML systems may need to be considered more trustworthy for broader deployment. Specifically, concerns over privacy breaches, discriminating performance, and vulnerability to adversarial attacks have all been discovered in ML research fields. In order to address the above challenges and risks, a significant number of efforts have been made to ensure these ML systems are trustworthy, especially private, safe, and fair. In this paper, we conduct the first comprehensive survey on speech-centric trustworthy ML topics related to privacy, safety, and fairness. In addition to serving as a summary report for the research community, we point out several promising future research directions to inspire the researchers who wish to explore further in this area.
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Recently, evolutionary multitasking (EMT) has been successfully used in the field of high-dimensional classification. However, the generation of multiple tasks in the existing EMT-based feature selection (FS) methods is relatively simple, using only the Relief-F method to collect related features with similar importance into one task, which cannot provide more diversified tasks for knowledge transfer. Thus, this paper devises a new EMT algorithm for FS in high-dimensional classification, which first adopts different filtering methods to produce multiple tasks and then modifies a competitive swarm optimizer to efficiently solve these related tasks via knowledge transfer. First, a diversified multiple task generation method is designed based on multiple filtering methods, which generates several relevant low-dimensional FS tasks by eliminating irrelevant features. In this way, useful knowledge for solving simple and relevant tasks can be transferred to simplify and speed up the solution of the original high-dimensional FS task. Then, a competitive swarm optimizer is modified to simultaneously solve these relevant FS tasks by transferring useful knowledge among them. Numerous empirical results demonstrate that the proposed EMT-based FS method can obtain a better feature subset than several state-of-the-art FS methods on eighteen high-dimensional datasets.
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Spatio-temporal modeling as a canonical task of multivariate time series forecasting has been a significant research topic in AI community. To address the underlying heterogeneity and non-stationarity implied in the graph streams, in this study, we propose Spatio-Temporal Meta-Graph Learning as a novel Graph Structure Learning mechanism on spatio-temporal data. Specifically, we implement this idea into Meta-Graph Convolutional Recurrent Network (MegaCRN) by plugging the Meta-Graph Learner powered by a Meta-Node Bank into GCRN encoder-decoder. We conduct a comprehensive evaluation on two benchmark datasets (METR-LA and PEMS-BAY) and a large-scale spatio-temporal dataset that contains a variaty of non-stationary phenomena. Our model outperformed the state-of-the-arts to a large degree on all three datasets (over 27% MAE and 34% RMSE). Besides, through a series of qualitative evaluations, we demonstrate that our model can explicitly disentangle locations and time slots with different patterns and be robustly adaptive to different anomalous situations. Codes and datasets are available at https://github.com/deepkashiwa20/MegaCRN.
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Accurate spatial-temporal traffic flow forecasting is essential for helping traffic managers to take control measures and drivers to choose the optimal travel routes. Recently, graph convolutional networks (GCNs) have been widely used in traffic flow prediction owing to their powerful ability to capture spatial-temporal dependencies. The design of the spatial-temporal graph adjacency matrix is a key to the success of GCNs, and it is still an open question. This paper proposes reconstructing the binary adjacency matrix via tensor decomposition, and a traffic flow forecasting method is proposed. First, we reformulate the spatial-temporal fusion graph adjacency matrix into a three-way adjacency tensor. Then, we reconstructed the adjacency tensor via Tucker decomposition, wherein more informative and global spatial-temporal dependencies are encoded. Finally, a Spatial-temporal Synchronous Graph Convolutional module for localized spatial-temporal correlations learning and a Dilated Convolution module for global correlations learning are assembled to aggregate and learn the comprehensive spatial-temporal dependencies of the road network. Experimental results on four open-access datasets demonstrate that the proposed model outperforms state-of-the-art approaches in terms of the prediction performance and computational cost.
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