FIB/SEM断层扫描代表了电池研究和许多其他领域中三维纳米结构表征的必不可少的工具。然而，在许多情况下，对比度和3D分类/重建问题出现，这极大地限制了该技术的适用性，尤其是在多孔材料上，例如电池或燃料电池中用于电极材料的材料。区分不同的组件（例如主动LI存储颗粒和碳/粘合剂材料）很困难，并且通常可以防止对图像数据进行可靠的定量分析，甚至可能导致关于结构 - 质地关系的错误结论。在这项贡献中，我们提出了一种新型的数据分类方法，该方法是通过FIB/SEM断层扫描获得的三维图像数据及其在NMC电池电极材料中的应用。我们使用两个不同的图像信号，即Angled SE2腔室检测器和Inlens检测器信号的信号，将信号组合在一起并训练一个随机森林，即特定的机器学习算法。我们证明，这种方法可以克服适合多相测量的现有技术的当前局限性，并且即使在当前的最新技术失败或对大型训练集的需求之后，它也可以进行定量数据重建。这种方法可能会作为使用FIB/SEM断层扫描的未来研究指南。

The BERT family of neural language models have become highly popular due to their ability to provide sequences of text with rich context-sensitive token encodings which are able to generalise well to many NLP tasks. We introduce gaBERT, a monolingual BERT model for the Irish language. We compare our gaBERT model to multilingual BERT and the monolingual Irish WikiBERT, and we show that gaBERT provides better representations for a downstream parsing task. We also show how different filtering criteria, vocabulary size and the choice of subword tokenisation model affect downstream performance. We compare the results of fine-tuning a gaBERT model with an mBERT model for the task of identifying verbal multiword expressions, and show that the fine-tuned gaBERT model also performs better at this task. We release gaBERT and related code to the community.

Machine learning models are typically evaluated by computing similarity with reference annotations and trained by maximizing similarity with such. Especially in the bio-medical domain, annotations are subjective and suffer from low inter- and intra-rater reliability. Since annotations only reflect the annotation entity's interpretation of the real world, this can lead to sub-optimal predictions even though the model achieves high similarity scores. Here, the theoretical concept of Peak Ground Truth (PGT) is introduced. PGT marks the point beyond which an increase in similarity with the reference annotation stops translating to better Real World Model Performance (RWMP). Additionally, a quantitative technique to approximate PGT by computing inter- and intra-rater reliability is proposed. Finally, three categories of PGT-aware strategies to evaluate and improve model performance are reviewed.

Remote sensing of the Earth's surface water is critical in a wide range of environmental studies, from evaluating the societal impacts of seasonal droughts and floods to the large-scale implications of climate change. Consequently, a large literature exists on the classification of water from satellite imagery. Yet, previous methods have been limited by 1) the spatial resolution of public satellite imagery, 2) classification schemes that operate at the pixel level, and 3) the need for multiple spectral bands. We advance the state-of-the-art by 1) using commercial imagery with panchromatic and multispectral resolutions of 30 cm and 1.2 m, respectively, 2) developing multiple fully convolutional neural networks (FCN) that can learn the morphological features of water bodies in addition to their spectral properties, and 3) FCN that can classify water even from panchromatic imagery. This study focuses on rivers in the Arctic, using images from the Quickbird, WorldView, and GeoEye satellites. Because no training data are available at such high resolutions, we construct those manually. First, we use the RGB, and NIR bands of the 8-band multispectral sensors. Those trained models all achieve excellent precision and recall over 90% on validation data, aided by on-the-fly preprocessing of the training data specific to satellite imagery. In a novel approach, we then use results from the multispectral model to generate training data for FCN that only require panchromatic imagery, of which considerably more is available. Despite the smaller feature space, these models still achieve a precision and recall of over 85%. We provide our open-source codes and trained model parameters to the remote sensing community, which paves the way to a wide range of environmental hydrology applications at vastly superior accuracies and 2 orders of magnitude higher spatial resolution than previously possible.

The detection of anomalies in time series data is crucial in a wide range of applications, such as system monitoring, health care or cyber security. While the vast number of available methods makes selecting the right method for a certain application hard enough, different methods have different strengths, e.g. regarding the type of anomalies they are able to find. In this work, we compare six unsupervised anomaly detection methods with different complexities to answer the questions: Are the more complex methods usually performing better? And are there specific anomaly types that those method are tailored to? The comparison is done on the UCR anomaly archive, a recent benchmark dataset for anomaly detection. We compare the six methods by analyzing the experimental results on a dataset- and anomaly type level after tuning the necessary hyperparameter for each method. Additionally we examine the ability of individual methods to incorporate prior knowledge about the anomalies and analyse the differences of point-wise and sequence wise features. We show with broad experiments, that the classical machine learning methods show a superior performance compared to the deep learning methods across a wide range of anomaly types.

The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps.

Machine learning models are known to be susceptible to adversarial perturbation. One famous attack is the adversarial patch, a sticker with a particularly crafted pattern that makes the model incorrectly predict the object it is placed on. This attack presents a critical threat to cyber-physical systems that rely on cameras such as autonomous cars. Despite the significance of the problem, conducting research in this setting has been difficult; evaluating attacks and defenses in the real world is exceptionally costly while synthetic data are unrealistic. In this work, we propose the REAP (REalistic Adversarial Patch) benchmark, a digital benchmark that allows the user to evaluate patch attacks on real images, and under real-world conditions. Built on top of the Mapillary Vistas dataset, our benchmark contains over 14,000 traffic signs. Each sign is augmented with a pair of geometric and lighting transformations, which can be used to apply a digitally generated patch realistically onto the sign. Using our benchmark, we perform the first large-scale assessments of adversarial patch attacks under realistic conditions. Our experiments suggest that adversarial patch attacks may present a smaller threat than previously believed and that the success rate of an attack on simpler digital simulations is not predictive of its actual effectiveness in practice. We release our benchmark publicly at https://github.com/wagner-group/reap-benchmark.

Self-supervised image denoising techniques emerged as convenient methods that allow training denoising models without requiring ground-truth noise-free data. Existing methods usually optimize loss metrics that are calculated from multiple noisy realizations of similar images, e.g., from neighboring tomographic slices. However, those approaches fail to utilize the multiple contrasts that are routinely acquired in medical imaging modalities like MRI or dual-energy CT. In this work, we propose the new self-supervised training scheme Noise2Contrast that combines information from multiple measured image contrasts to train a denoising model. We stack denoising with domain-transfer operators to utilize the independent noise realizations of different image contrasts to derive a self-supervised loss. The trained denoising operator achieves convincing quantitative and qualitative results, outperforming state-of-the-art self-supervised methods by 4.7-11.0%/4.8-7.3% (PSNR/SSIM) on brain MRI data and by 43.6-50.5%/57.1-77.1% (PSNR/SSIM) on dual-energy CT X-ray microscopy data with respect to the noisy baseline. Our experiments on different real measured data sets indicate that Noise2Contrast training generalizes to other multi-contrast imaging modalities.

Incorporating computed tomography (CT) reconstruction operators into differentiable pipelines has proven beneficial in many applications. Such approaches usually focus on the projection data and keep the acquisition geometry fixed. However, precise knowledge of the acquisition geometry is essential for high quality reconstruction results. In this paper, the differentiable formulation of fan-beam CT reconstruction is extended to the acquisition geometry. This allows to propagate gradient information from a loss function on the reconstructed image into the geometry parameters. As a proof-of-concept experiment, this idea is applied to rigid motion compensation. The cost function is parameterized by a trained neural network which regresses an image quality metric from the motion affected reconstruction alone. Using the proposed method, we are the first to optimize such an autofocus-inspired algorithm based on analytical gradients. The algorithm achieves a reduction in MSE by 35.5 % and an improvement in SSIM by 12.6 % over the motion affected reconstruction. Next to motion compensation, we see further use cases of our differentiable method for scanner calibration or hybrid techniques employing deep models.

In Novel Class Discovery (NCD), the goal is to find new classes in an unlabeled set given a labeled set of known but different classes. While NCD has recently gained attention from the community, no framework has yet been proposed for heterogeneous tabular data, despite being a very common representation of data. In this paper, we propose TabularNCD, a new method for discovering novel classes in tabular data. We show a way to extract knowledge from already known classes to guide the discovery process of novel classes in the context of tabular data which contains heterogeneous variables. A part of this process is done by a new method for defining pseudo labels, and we follow recent findings in Multi-Task Learning to optimize a joint objective function. Our method demonstrates that NCD is not only applicable to images but also to heterogeneous tabular data.