光学相干断层扫描（OCT）是一种非侵入性的3D模态，广泛用于视网膜的眼科。在OCT上实现自动化的解剖学视网膜层分割对于检测和监测不同视网膜疾病（如年龄相关的黄斑病（AMD）或糖尿病性视网膜病）很重要。但是，大多数最先进的层分割方法基于纯监督的深度学习，需要大量的像素级注释数据，这些数据昂贵且难以获得。考虑到这一点，我们将半监督的范式介绍到视网膜层分割任务中，该任务利用大规模未标记数据集中存在的信息以及解剖学先验。特别是，一种新型的完全可区分的方法用于将表面位置回归转换为像素结构化分割，从而使以耦合方式同时使用1D表面和2D层表示来训练模型。特别是，这些2D分割被用作解剖因素，与学习的样式因子一起组成了用于重建输入图像的分离表示。同时，我们建议一组解剖学先验，以改善有限的标记数据时，可以改善网络训练。我们在使用中间和湿amd的现实世界中的扫描数据集上证明了我们的方法在使用我们的完整训练集时优于最先进带有标记数据的一部分。

The automated segmentation and tracking of macrophages during their migration are challenging tasks due to their dynamically changing shapes and motions. This paper proposes a new algorithm to achieve automatic cell tracking in time-lapse microscopy macrophage data. First, we design a segmentation method employing space-time filtering, local Otsu's thresholding, and the SUBSURF (subjective surface segmentation) method. Next, the partial trajectories for cells overlapping in the temporal direction are extracted in the segmented images. Finally, the extracted trajectories are linked by considering their direction of movement. The segmented images and the obtained trajectories from the proposed method are compared with those of the semi-automatic segmentation and manual tracking. The proposed tracking achieved 97.4% of accuracy for macrophage data under challenging situations, feeble fluorescent intensity, irregular shapes, and motion of macrophages. We expect that the automatically extracted trajectories of macrophages can provide pieces of evidence of how macrophages migrate depending on their polarization modes in the situation, such as during wound healing.

Diabetic Retinopathy (DR) is a leading cause of vision loss in the world, and early DR detection is necessary to prevent vision loss and support an appropriate treatment. In this work, we leverage interactive machine learning and introduce a joint learning framework, termed DRG-Net, to effectively learn both disease grading and multi-lesion segmentation. Our DRG-Net consists of two modules: (i) DRG-AI-System to classify DR Grading, localize lesion areas, and provide visual explanations; (ii) DRG-Expert-Interaction to receive feedback from user-expert and improve the DRG-AI-System. To deal with sparse data, we utilize transfer learning mechanisms to extract invariant feature representations by using Wasserstein distance and adversarial learning-based entropy minimization. Besides, we propose a novel attention strategy at both low- and high-level features to automatically select the most significant lesion information and provide explainable properties. In terms of human interaction, we further develop DRG-Net as a tool that enables expert users to correct the system's predictions, which may then be used to update the system as a whole. Moreover, thanks to the attention mechanism and loss functions constraint between lesion features and classification features, our approach can be robust given a certain level of noise in the feedback of users. We have benchmarked DRG-Net on the two largest DR datasets, i.e., IDRID and FGADR, and compared it to various state-of-the-art deep learning networks. In addition to outperforming other SOTA approaches, DRG-Net is effectively updated using user feedback, even in a weakly-supervised manner.

Research has shown that climate change creates warmer temperatures and drier conditions, leading to longer wildfire seasons and increased wildfire risks in the United States. These factors have in turn led to increases in the frequency, extent, and severity of wildfires in recent years. Given the danger posed by wildland fires to people, property, wildlife, and the environment, there is an urgency to provide tools for effective wildfire management. Early detection of wildfires is essential to minimizing potentially catastrophic destruction. In this paper, we present our work on integrating multiple data sources in SmokeyNet, a deep learning model using spatio-temporal information to detect smoke from wildland fires. Camera image data is integrated with weather sensor measurements and processed by SmokeyNet to create a multimodal wildland fire smoke detection system. We present our results comparing performance in terms of both accuracy and time-to-detection for multimodal data vs. a single data source. With a time-to-detection of only a few minutes, SmokeyNet can serve as an automated early notification system, providing a useful tool in the fight against destructive wildfires.

Many modern research fields increasingly rely on collecting and analysing massive, often unstructured, and unwieldy datasets. Consequently, there is growing interest in machine learning and artificial intelligence applications that can harness this `data deluge'. This broad nontechnical overview provides a gentle introduction to machine learning with a specific focus on medical and biological applications. We explain the common types of machine learning algorithms and typical tasks that can be solved, illustrating the basics with concrete examples from healthcare. Lastly, we provide an outlook on open challenges, limitations, and potential impacts of machine-learning-powered medicine.

The detection of anomalies in time series data is crucial in a wide range of applications, such as system monitoring, health care or cyber security. While the vast number of available methods makes selecting the right method for a certain application hard enough, different methods have different strengths, e.g. regarding the type of anomalies they are able to find. In this work, we compare six unsupervised anomaly detection methods with different complexities to answer the questions: Are the more complex methods usually performing better? And are there specific anomaly types that those method are tailored to? The comparison is done on the UCR anomaly archive, a recent benchmark dataset for anomaly detection. We compare the six methods by analyzing the experimental results on a dataset- and anomaly type level after tuning the necessary hyperparameter for each method. Additionally we examine the ability of individual methods to incorporate prior knowledge about the anomalies and analyse the differences of point-wise and sequence wise features. We show with broad experiments, that the classical machine learning methods show a superior performance compared to the deep learning methods across a wide range of anomaly types.

Dialogue models are able to generate coherent and fluent responses, but they can still be challenging to control and may produce non-engaging, unsafe results. This unpredictability diminishes user trust and can hinder the use of the models in the real world. To address this, we introduce DialGuide, a novel framework for controlling dialogue model behavior using natural language rules, or guidelines. These guidelines provide information about the context they are applicable to and what should be included in the response, allowing the models to generate responses that are more closely aligned with the developer's expectations and intent. We evaluate DialGuide on three tasks in open-domain dialogue response generation: guideline selection, response generation, and response entailment verification. Our dataset contains 10,737 positive and 15,467 negative dialogue context-response-guideline triplets across two domains - chit-chat and safety. We provide baseline models for the tasks and benchmark their performance. We also demonstrate that DialGuide is effective in the dialogue safety domain, producing safe and engaging responses that follow developer guidelines.

Real-time individual endpoint prediction has always been a challenging task but of great clinic utility for both patients and healthcare providers. With 6,879 chronic kidney disease stage 4 (CKD4) patients as a use case, we explored the feasibility and performance of gated recurrent units with decay that models Weibull probability density function (GRU-D-Weibull) as a semi-parametric longitudinal model for real-time individual endpoint prediction. GRU-D-Weibull has a maximum C-index of 0.77 at 4.3 years of follow-up, compared to 0.68 achieved by competing models. The L1-loss of GRU-D-Weibull is ~66% of XGB(AFT), ~60% of MTLR, and ~30% of AFT model at CKD4 index date. The average absolute L1-loss of GRU-D-Weibull is around one year, with a minimum of 40% Parkes serious error after index date. GRU-D-Weibull is not calibrated and significantly underestimates true survival probability. Feature importance tests indicate blood pressure becomes increasingly important during follow-up, while eGFR and blood albumin are less important. Most continuous features have non-linear/parabola impact on predicted survival time, and the results are generally consistent with existing knowledge. GRU-D-Weibull as a semi-parametric temporal model shows advantages in built-in parameterization of missing, native support for asynchronously arrived measurement, capability of output both probability and point estimates at arbitrary time point for arbitrary prediction horizon, improved discrimination and point estimate accuracy after incorporating newly arrived data. Further research on its performance with more comprehensive input features, in-process or post-process calibration are warranted to benefit CKD4 or alike terminally-ill patients.

In the field of multimodal sentiment analysis (MSA), a few studies have leveraged the inherent modality correlation information stored in samples for self-supervised learning. However, they feed the training pairs in a random order without consideration of difficulty. Without human annotation, the generated training pairs of self-supervised learning often contain noise. If noisy or hard pairs are used for training at the easy stage, the model might be stuck in bad local optimum. In this paper, we inject curriculum learning into weakly supervised modality correlation learning. The weakly supervised correlation learning leverages the label information to generate scores for negative pairs to learn a more discriminative embedding space, where negative pairs are defined as two unimodal embeddings from different samples. To assist the correlation learning, we feed the training pairs to the model according to difficulty by the proposed curriculum learning, which consists of elaborately designed scoring and feeding functions. The scoring function computes the difficulty of pairs using pre-trained and current correlation predictors, where the pairs with large losses are defined as hard pairs. Notably, the hardest pairs are discarded in our algorithm, which are assumed as noisy pairs. Moreover, the feeding function takes the difference of correlation losses as feedback to determine the feeding actions (`stay', `step back', or `step forward'). The proposed method reaches state-of-the-art performance on MSA.

With the recent advances in video and 3D understanding, novel 4D spatio-temporal challenges fusing both concepts have emerged. Towards this direction, the Ego4D Episodic Memory Benchmark proposed a task for Visual Queries with 3D Localization (VQ3D). Given an egocentric video clip and an image crop depicting a query object, the goal is to localize the 3D position of the center of that query object with respect to the camera pose of a query frame. Current methods tackle the problem of VQ3D by lifting the 2D localization results of the sister task Visual Queries with 2D Localization (VQ2D) into a 3D reconstruction. Yet, we point out that the low number of Queries with Poses (QwP) from previous VQ3D methods severally hinders their overall success rate and highlights the need for further effort in 3D modeling to tackle the VQ3D task. In this work, we formalize a pipeline that better entangles 3D multiview geometry with 2D object retrieval from egocentric videos. We estimate more robust camera poses, leading to more successful object queries and substantially improved VQ3D performance. In practice, our method reaches a top-1 overall success rate of 86.36% on the Ego4D Episodic Memory Benchmark VQ3D, a 10x improvement over the previous state-of-the-art. In addition, we provide a complete empirical study highlighting the remaining challenges in VQ3D.